This is the only real issue I've encountered bridging plugins. I guess about 95% have just worked, a few I can't authorise (D16, Klevgrand) so just have a handful that don't update their GUIs until you move the window etc. I've seen people mention 3D support in GL could be the issue but haven't got around to trying the fixes (look complicated to my newbie Linux brain )
Off the top of my head, stuck ones include: Audiority (though maybe linux native sometime rumoured...), recent Nusofting plugs (older ones are fine), BPBs VHS (older ones ok).